/*
 * This is the function that actually highlights a text string by
 * adding HTML tags before and after all occurrences of the search
 * term. You can pass your own tags if you'd like, or if the
 * highlightStartTag or highlightEndTag parameters are omitted or
 * are empty strings then the default <font> tags will be used.
 */
function initHighlighting() {
	return true;
}

function getParameter ( queryString, parameterName ) {
	// Add "=" to the parameter name (i.e. parameterName=value)
	var parameterName = parameterName + "=";
	if ( queryString.length > 0 ) {
		// Find the beginning of the string
		begin = queryString.indexOf ( parameterName );
		// If the parameter name is not found, skip it, otherwise return the value
		if ( begin != -1 ) {
			// Add the length (integer) to the beginning
			begin += parameterName.length;
			// Multiple parameters are separated by the "&" sign
			end = queryString.indexOf ( "&" , begin );
			if ( end == -1 ) {
				end = queryString.length
			}
			// Return the string
			return unescape ( queryString.substring ( begin, end ) );
		}
		// Return "null" if no parameter has been found
		return "null";
	}
}
 
function doHighlight(bodyText, searchTerm, highlightStartTag, highlightEndTag) 
{
  // the highlightStartTag and highlightEndTag parameters are optional
  if ((!highlightStartTag) || (!highlightEndTag)) {
    highlightStartTag = "<span style='color:blue; background-color:yellow;'>";
    highlightEndTag = "</span>";
  }
 
  // find all occurences of the search term in the given text,
  // and add some "highlight" tags to them (we're not using a
  // regular expression search, because we want to filter out
  // matches that occur within HTML tags and script blocks, so
  // we have to do a little extra validation)
  var newText = "";
  var i = -1;
  var lcSearchTerm = searchTerm.toLowerCase();
  var lcBodyText = bodyText.toLowerCase();
  

  while (bodyText.length > 0) {
    i = lcBodyText.indexOf(lcSearchTerm, i+1);
    if (i < 0) {
      newText += bodyText;
      bodyText = "";

    } else {
      // skip anything inside an HTML tag
      if (bodyText.lastIndexOf(">", i) >= bodyText.lastIndexOf("<", i)) {
        // skip anything inside a <script> block
        if (lcBodyText.lastIndexOf("/script>", i) >= lcBodyText.lastIndexOf("<script", i)) {
          newText += bodyText.substring(0, i) + highlightStartTag + bodyText.substr(i, searchTerm.length) + highlightEndTag;
          bodyText = bodyText.substr(i + searchTerm.length);
          lcBodyText = bodyText.toLowerCase();
          i = -1;
        }
      }
    }
  }

    return newText;

}


/*
 * This is sort of a wrapper function to the doHighlight function.
 * It takes the searchText that you pass, optionally splits it into
 * separate words, and transforms the text on the current web page.
 * Only the "searchText" parameter is required; all other parameters
 * are optional and can be omitted.
 */
function highlightSearchTerms(searchText, treatAsPhrase, warnOnFailure, highlightStartTag, highlightEndTag,path)
{ 
  // if the treatAsPhrase parameter is true, then we should search for 
  // the entire phrase that was entered; otherwise, we will split the
  // search string so that each word is searched for and highlighted
  // individually
  
  if(searchText.indexOf("*")>0)
  	searchText = searchText.substr(0,searchText.indexOf("*"));
  
  
  if (treatAsPhrase) {
    searchArray = [searchText];
  } else {
    searchArray = searchText.split(" ");
  }
  
  if (!document.body || typeof(document.body.innerHTML) == "undefined") {
    if (warnOnFailure) {
      alert("Sorry, for some reason the text of this page is unavailable. Searching will not work.");
    }
    return false;
  }
  
  /*load search word list*/
  /*xmlUrl=path+"/BIO/Navigation/DE/root,did=74978?view=render";
	
	$.ajax({
	  type: "GET",
	  async: false,
	  url: xmlUrl,
	  dataType: "string",
	  success: function(data){
	    wordlist=data;
	  }
	});
  */
 /*var bodyText = document.body.innerHTML;*/
 var bodyText = $("#nest").html();
  for (var i = 0; i < searchArray.length; i++) {
    //inList = checkWord(wordlist, searchArray[i]);
    inList = checkWord(searchArray[i]);
    if(!inList)
    	bodyText = doHighlight(bodyText, searchArray[i], highlightStartTag, highlightEndTag);
  }
  
  /*document.body.innerHTML = bodyText;*/
  $("#nest").html(bodyText);
  initAllOtherJS();
  return true;
}

function checkWord(searchTerm){
	searchTerm = searchTerm.toLowerCase();
	
    var operatorlist = "and or not & &nsbp nbsp";
   // var inList = -1;
    var inList2 = -1;
   // inList= wordlist.indexOf(searchTerm); 
	inList2= operatorlist.indexOf(searchTerm); 
	if(inList2>=0){
		return true;
	}else{
		return false;
	}
}


/*
 * This displays a dialog box that allows a user to enter their own
 * search terms to highlight on the page, and then passes the search
 * text or phrase to the highlightSearchTerms function. All parameters
 * are optional.
 */
function searchPrompt(defaultText, treatAsPhrase, textColor, bgColor)
{
  // This function prompts the user for any words that should
  // be highlighted on this web page
  if (!defaultText) {
    defaultText = "";
  }
  
  // we can optionally use our own highlight tag values
  if ((!textColor) || (!bgColor)) {
    highlightStartTag = "";
    highlightEndTag = "";
  } else {
    highlightStartTag = "<span style='color:" + textColor + "; background-color:" + bgColor + ";'>";
    highlightEndTag = "</span>";
  }
  
  if (treatAsPhrase) {
    promptText = "Please enter the phrase you'd like to search for:";
  } else {
    promptText = "Please enter the words you'd like to search for, separated by spaces:";
  }
  
  searchText = prompt(promptText, defaultText);

  if (!searchText)  {
    alert("No search terms were entered. Exiting function.");
    return false;
  }
  
  return highlightSearchTerms(searchText, treatAsPhrase, true, highlightStartTag, highlightEndTag);
}


/*
 * This function takes a referer/referrer string and parses it
 * to determine if it contains any search terms. If it does, the
 * search terms are passed to the highlightSearchTerms function
 * so they can be highlighted on the current page.
 */
function highlightGoogleSearchTerms(referrer)
{
  // This function has only been very lightly tested against
  // typical Google search URLs. If you wanted the Google search
  // terms to be automatically highlighted on a page, you could
  // call the function in the onload event of your <body> tag, 
  // like this:
  //   <body onload='highlightGoogleSearchTerms(document.referrer);'>
  
  //var referrer = document.referrer;
  if (!referrer) {
    return false;
  }
  
  var queryPrefix = "q=";
  var startPos = referrer.toLowerCase().indexOf(queryPrefix);
  if ((startPos < 0) || (startPos + queryPrefix.length == referrer.length)) {
    return false;
  }
  
  var endPos = referrer.indexOf("&", startPos);
  if (endPos < 0) {
    endPos = referrer.length;
  }
  
  var queryString = referrer.substring(startPos + queryPrefix.length, endPos);
  // fix the space characters
  queryString = queryString.replace(/%20/gi, " ");
  queryString = queryString.replace(/\+/gi, " ");
  // remove the quotes (if you're really creative, you could search for the
  // terms within the quotes as phrases, and everything else as single terms)
  queryString = queryString.replace(/%22/gi, "");
  queryString = queryString.replace(/\"/gi, "");
  
  return highlightSearchTerms(queryString, false);
}


/*
 * This function is just an easy way to test the highlightGoogleSearchTerms
 * function.
 */
function testHighlightGoogleSearchTerms()
{
  var referrerString = "http://www.google.com/search?q=javascript%20highlight&start=0";
  referrerString = prompt("Test the following referrer string:", referrerString);
  return highlightGoogleSearchTerms(referrerString);
}